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rs51847144 SNP Detail
Summary
  • ID
    rs51847144
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr1:170823066 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCTAGCCTTG ATGAAGGATG
    AGGTAGGTTA GGCACCACCC GTTTTTATGT GGACACTCTG GTTACCATAG CTATGCAGAG
    TGAAATAGGA GAATTCAGAG TCAAGGCAGA CACACCAGAC TTTCTGTCCT GCTTCCCATT
    ACCATGCAGG GCGGAAGGAG TCAACTCTTT TCAGCAAATC AGTTCTGAGT ATGTGTTATA
    S
    AATCATCTTT CCCAGCTTCC AGTCCATTTT CTCAAAGCAC TATTCATCTC AAGCCCATGT
    ATCCAGTTCT AGAAAAGACT TCTACAGACA GCCAGATATT CCTGACCAAG CCACTGGCAT
    GATCAATAGA TAGCCCCTGC CCACCCCAAC ACACACACAC ACACACACAC ACACACACAC
    ACACACACAC ACACCAGATT                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss60345148 NES15844884 PERLEGEN MM_PANEL2 f SNP G G G G G G C G G G C G G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs51847144 SNP G G G G G G C G G G C G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60345148 NES15844884 PERLEGEN MM_PANEL f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:170823066 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
D1Dcr17 DNA Segment, Chr 1, Derry C. Roopenian 17 136 bp proximal
D1Mit146 DNA segment, Chr 1, Massachusetts Institute of Technology 146 121 bp proximal
Rr423177 regulatory region 423177 1751 bp distal
Rr423178 regulatory region 423178 1325 bp proximal
Rr423179 regulatory region 423179 1455 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory