rs51847810 SNP Detail

Summary

• ID
  rs51847810
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:116952914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAGATAG GGTTAGGGAA
  ACATTTTAAG AATTAAATAG GATTAAGGAC ACCTGGAGTG TGGGCGATGT TGAGCTATTG
  TGTTTTTTTA TTATTATTTT TTTAACCTTC GAGAGTATTG AACCCGTCTT AATCAAGAAC
  AGAGTAATTA AAAATTTTGA ATGCTAGGGT TTGGCTTCCG TCTGTGATAA AGTACGGTTT
  W
  CATTGCCGAA CGCGTTGGTG ACTTCATCAG AGCTTGATCC ATAAGTTTTT GCTTTTTTGG
  ACTGTCCTTA GGTTTTCCAA ATGAATCACC GTGCCTTTTA AATATTTTGC TTTAATGTAG
  CAGCCTCTTG AAGGAATAAT GGGGCTGTAA GAGTTTCCTG TTGAGAGTTA ATTTGGGGCC
  GAATTTTGGT GTCTGTTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355379028	MGP_WTSI_2_116948169	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs51847810					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355379028	MGP_WTSI_2_116948169	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:116952914 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12072	CpG island 12072	332 bp distal
Gm74661	predicted gene, 74661	1475 bp downstream
Rr367269	regulatory region 367269	1568 bp downstream
Rr397194	regulatory region 397194	377 bp upstream
Rr563062	regulatory region 563062	1946 bp distal
Rr563063	regulatory region 563063	1998 bp distal
Rr563064	regulatory region 563064	785 bp distal
Rr563065	regulatory region 563065	within coordinates
Spred1	sprouty protein with EVH-1 domain 1, related sequence	within coordinates
Tssr19479	transcription start site region 19479	1992 bp downstream
Tssr19480	transcription start site region 19480	1679 bp downstream
Tssr19481	transcription start site region 19481	1639 bp downstream
Tssr19482	transcription start site region 19482	1578 bp downstream
Tssr19483	transcription start site region 19483	1551 bp downstream
Tssr19484	transcription start site region 19484	1528 bp downstream
Tssr19485	transcription start site region 19485	1500 bp downstream
Tssr19486	transcription start site region 19486	1435 bp downstream
Tssr19487	transcription start site region 19487	1388 bp downstream
Tssr19488	transcription start site region 19488	1284 bp downstream
Tssr19489	transcription start site region 19489	1256 bp downstream
Tssr19490	transcription start site region 19490	1034 bp downstream
Tssr19491	transcription start site region 19491	960 bp downstream
Tssr19492	transcription start site region 19492	789 bp upstream
Tssr19493	transcription start site region 19493	1105 bp upstream
Tssr25740	transcription start site region 25740	440 bp downstream