rs51849196 SNP Detail

Summary

• ID
  rs51849196
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:126422407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATCGTGT TTTAAATTAT
  AGTCTAGGTC ATTCTCTTGC TTAATACTGT ACTGGGAAAA TGCATACAAG CTCCACTACT
  CATCTACTCA TCTGGCCAGA GGCTGTGTCT TCTGCGCAGT TTATTAGAGC CCCATGGTGC
  TTATCACAGT GCCAGGTAAC TCTGTGAATA TCAAAGGCTC CAAGTCGTGA TTCTCAAGTT
  R
  GTATCCAAAA TGGCAAACAT AGTTTCAAAG CAAGGTGGGT TTCCACTTAC AGTAGATACT
  GTAAGTGATG GGCAAGACTG GTGCCCTATT AAGAAAGTTT TCCTAATATT AGCTACTTTT
  GAATCTTTGT GCATGTGTTT GTGTGTATAT GATATACATG TGCATATATG TGTGAGAGTG
  CATCTGCTGT GGAGTGTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60794524	NES16466541	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51849196					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60794524	NES16466541	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:126422407 () rs orientation: forward

Symbol	Name	Function Class
Cpgi687	CpG island 687	1839 bp distal
Nckap5	NCK-associated protein 5	within coordinates
Rr417489	regulatory region 417489	1939 bp distal
Rr417491	regulatory region 417491	1435 bp distal
Tssr13401	transcription start site region 13401	1946 bp upstream
Tssr13402	transcription start site region 13402	1866 bp upstream
Tssr13403	transcription start site region 13403	1822 bp upstream
Tssr13404	transcription start site region 13404	1796 bp upstream
Tssr13405	transcription start site region 13405	1719 bp upstream