rs51849337 SNP Detail

Summary

• ID
  rs51849337
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79974377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAGCAGT TAAGAGCACT
  TGTCCTTGCA GTGGACCAGA GTTTGATTCC CACACAGTGA CCCACAAAGG TCTGTAGAGC
  TCCAGGTCTA GGGAATCCCA CACCCTCTTC TCACCTCCTC AGGCAATGCA TTTATACGAT
  GCTCATATGA ACATGCAGGC AGACACTAAT ACAAGACAAA GAGAAAATAA AAATGAAAAA
  R
  AGTCTTCCAA TGTACAAAGT TATAAAGATC TTCCCTTGTT TTCCTCTAGA CGTTTTATAG
  GATCATAGTA TAACAGCTGC CTCAGACCTG AAACTCCATC ACAGGGATAA AGCAGCAGGA
  GGAATAGAAA TTCAAAACCC ATCCCCCTCC TCCCGGTGAA TTCCAGAGGC CGGCCTCTAC
  AAGCCACTCT GTCTCAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss63570353	NES17024159	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51849337					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63570353	NES17024159	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79974377 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7362	CpG island 7362	593 bp proximal
Gm24204	predicted gene, 24204	1623 bp upstream
Gm31134	predicted gene, 31134	557 bp downstream
Syngr1	synaptogyrin 1	1160 bp upstream
Tssr132156	transcription start site region 132156	1022 bp upstream
Tssr132157	transcription start site region 132157	1144 bp upstream
Tssr135417	transcription start site region 135417	1273 bp upstream
Tssr135418	transcription start site region 135418	1646 bp downstream