rs51850853 SNP Detail

Summary

• ID
  rs51850853
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:52519424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTACAGAGA TGGAGCGGGG
  AGGAGGAGGG CAATTTTCTC CTAGAGAGCA TAAAAAATGC AAGTGAATTG AGGCTTGCCA
  CTAATCCTAG AATCCCAGAA CGAAGGAATG CTTTCCTGAG TCTTGAAGGA AATAAAATCA
  GGCTCATGGA AGAGAGTACC ACTTAAAACA GTAGCTAGGA GCTTATGCAA GAGTTACTTC
  R
  GGGCTGGAGA GATGGCTCAG TGGTTAGGAG CTTTTCCAGA GGTCCTGAGT TCAATTCCCA
  GCAACCACAT GGTGGCTCAC GACCATCTGT AATGGGATCA GATGGCCTCT TTTGGTGGGT
  CTGGAGAGAG CAACAGTATA CGCACATAAA ATAAGTAAAT AAATCTTAAA AAAAAAAGAA
  AGAATCACTT CAAAGACTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss148439966	ENSMUSSNP470155	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs51850853					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:52519424 () rs orientation: forward

Symbol	Name	Function Class
Rr611419	regulatory region 611419	879 bp distal
Rr611420	regulatory region 611420	1304 bp proximal
Rr611421	regulatory region 611421	1720 bp proximal
Sod3	superoxide dismutase 3, extracellular	1722 bp upstream
Tssr46168	transcription start site region 46168	1830 bp upstream
Tssr46169	transcription start site region 46169	1843 bp upstream
Tssr46170	transcription start site region 46170	1874 bp upstream