rs51851394 SNP Detail

Summary

• ID
  rs51851394
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26755922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGTTGGA GCCAGGTGAC
  ACCTGCTCTG AGAAATAGAT TTACCTGTCT TAGTGTCATG CTGGTACATT AAAATCTACC
  ATTTTATACC ACAGAAATTG GCAAACACTA TCAAGCACCC AACCATCATC TTGCATCCAA
  AGACTGGTCA TTAATTACTT ATAAGTTGAT TATTTGTAAG TTTCTTCATG GTGAAGACCA
  Y
  GAACATGTGA AGACAAAGAC CATAGTGATC TAGCACACCA TATTGCAAGA CAGTGAGGTA
  GACTTTACTG TGAAGTTCCT GTAGAACCTA AGGCAGGTGT GACACACTGG GCTTTTAAAG
  TCTTCTGGAA ACTCTATTAA CATCCTTGGT GTTTTCTTAA TCTTCCTTCT TTCCCATACA
  GGTCTTCACC CTCCATCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60554811	NES16569668	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51851394					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60554811	NES16569668	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26755922 () rs orientation: forward

Symbol	Name	Function Class
Gm34606	predicted gene, 34606	584 bp downstream
Gm50275	predicted gene, 50275	within coordinates
Gm64855	predicted gene, 64855	1189 bp downstream
Rr405114	regulatory region 405114	1102 bp upstream
Tssr5048	transcription start site region 5048	1591 bp downstream
Tssr5049	transcription start site region 5049	1540 bp upstream
Tssr5050	transcription start site region 5050	1112 bp downstream
Tssr143246	transcription start site region 143246	1382 bp upstream