rs51852236 SNP Detail

Summary

• ID
  rs51852236
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:40490452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TCTTTTTCTA TTATTATTTT GACGACTCCC GAGTTGCGCC
  CATGCTCTTG TCAGCTTCGT TTTAGGCGTA GCACAGCCAG GCAGAAGAAA ATGGGGCAAA
  R
  CGTGCTCCGG GCGGTCTTCT TTTTAGTCCT GGGGCTTTTG GGTCATTCTC ACGGAGGATT
  CCCCAACACC ATCAGCATAG GTAAGCTCCC CAGAGCCAGC C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss134161650	ENSMUSSNP3215880	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs51852236					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:40490452 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gria3	glutamate receptor, ionotropic, AMPA3 (alpha 3)			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Rr394967	regulatory region 394967			within coordinates
Rr690837	regulatory region 690837			633 bp distal
Rr690838	regulatory region 690838			within coordinates
Tssr160796	transcription start site region 160796			972 bp downstream
Tssr160797	transcription start site region 160797			907 bp downstream
Tssr160798	transcription start site region 160798			875 bp downstream
Tssr160799	transcription start site region 160799			846 bp downstream
Tssr160800	transcription start site region 160800			742 bp downstream
Tssr160801	transcription start site region 160801			690 bp downstream
Tssr160802	transcription start site region 160802			668 bp downstream
Tssr160803	transcription start site region 160803			375 bp downstream
Tssr160804	transcription start site region 160804			148 bp downstream
Tssr160805	transcription start site region 160805			10 bp downstream
Tssr160806	transcription start site region 160806			39 bp upstream