rs51852321 SNP Detail

Summary

• ID
  rs51852321
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174315163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCGGCGCC GCACTACGCA
  TGCGCGGGCC TTGGCGGCGG GACTTTTTGG CTGGTTTGGC GGGTTGCTGA TATGTGTCTA
  AAGTTCTCAT TGGATGTGGC TGAGCCTGGC GGCGTTTGCC AGAGTACGGT TTTGTGGTGT
  GGTCTTAGAG AGTTAGTCCC ACCTCTTCAA TCTAAGCAGT GGGGTGGCGG GACAGGGGTG
  R
  TTTCAATCAG CACCCGTGCC CTTGCCAGCC CAGGGTTGGT TACCCTTGGT GGAACAGGCC
  ACCCAGACAG GGCTGGACCA ATTGCTCTAC GGTCATAGGT CATCTCCATC ACCATTTCTC
  AGTGATGCCC ACGCCCTCCT GTGCCTCCAC AACTTCCTGT TACATATTCC TCAGCAATTA
  CCACTCTGGA GTCATCTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148343956	ENSMUSSNP3173752	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320627901	CHEV_2_174298871	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51852321					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174315163 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12865	CpG island 12865	within coordinates
Gm38546	predicted gene, 38546	within coordinates
Prelid3b	PRELI domain containing 3B	429 bp upstream
Rr397557	regulatory region 397557	192 bp downstream
Rr572133	regulatory region 572133	483 bp distal
Rr572134	regulatory region 572134	747 bp distal
Rr572135	regulatory region 572135	380 bp distal
Rr572136	regulatory region 572136	352 bp distal
Rr572137	regulatory region 572137	175 bp distal
Rr572138	regulatory region 572138	within coordinates
Tssr28035	transcription start site region 28035	434 bp upstream
Tssr28036	transcription start site region 28036	351 bp upstream