rs51852564 SNP Detail

Summary

• ID
  rs51852564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3308514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTGACTT CATTAGGATG
  TAAGTTTTTT CAGCCAGTTT ATTAAGTTTT GATTTTACAG AGAGAAATCT AGTAGTTTTG
  CTTCTTTAAA CCTATTATAA AAATTTTAGA CATTGAGACT AGGATAGGGC TCTTTTTCGT
  TGATATACTA GCCAGGTGTA TCCCAATTCA CTTGTTGAAA TAACATATGT TGGCCCTACA
  Y
  GTAATTTTTT CATGCGTTCA TGATAATTCT ATAAGCATGT TAACAAGTGG GTTTATAAAT
  TTGTTCCAGA GTCTTGAAGA TGAAGACTTC TGTAAAACTG TGACCTCAGC TACTGCCAAT
  AAAACTGCGG AGCCCTCAGA GGCTCATAGC CACCACAAAC ACCACAACAA ACATGGGCAG
  GAGCATCTTG GCAGCAGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62609629	NES17307814	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51852564					SNP	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62609629	NES17307814	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3308514 () rs orientation: forward

Symbol	Name	Function Class
Ccdc152	coiled-coil domain containing 152	1038 bp downstream
Rr498565	regulatory region 498565	1421 bp distal
Selenop	selenoprotein P	within coordinates
Tssr4538	transcription start site region 4538	225 bp upstream
Tssr130395	transcription start site region 130395	1837 bp downstream
Tssr130396	transcription start site region 130396	1800 bp downstream
Tssr130397	transcription start site region 130397	89 bp upstream
Tssr130398	transcription start site region 130398	125 bp upstream
Tssr130399	transcription start site region 130399	233 bp upstream
Tssr130400	transcription start site region 130400	253 bp upstream
Tssr130401	transcription start site region 130401	267 bp upstream
Tssr130402	transcription start site region 130402	335 bp upstream
Tssr130403	transcription start site region 130403	367 bp upstream
Tssr130404	transcription start site region 130404	407 bp upstream
Tssr130405	transcription start site region 130405	427 bp upstream
Tssr130406	transcription start site region 130406	458 bp upstream
Tssr130407	transcription start site region 130407	492 bp upstream
Tssr130408	transcription start site region 130408	528 bp upstream
Tssr130409	transcription start site region 130409	537 bp upstream
Tssr130410	transcription start site region 130410	558 bp upstream
Tssr130411	transcription start site region 130411	614 bp upstream
Tssr130412	transcription start site region 130412	689 bp upstream
Tssr130413	transcription start site region 130413	942 bp upstream
Tssr130414	transcription start site region 130414	990 bp upstream
Tssr130415	transcription start site region 130415	1064 bp upstream
Tssr130416	transcription start site region 130416	1361 bp upstream
Tssr133563	transcription start site region 133563	157 bp downstream
Tssr133564	transcription start site region 133564	229 bp downstream
Tssr133565	transcription start site region 133565	277 bp downstream
Tssr133566	transcription start site region 133566	283 bp downstream
Tssr133567	transcription start site region 133567	530 bp downstream
Tssr133568	transcription start site region 133568	601 bp downstream