rs51852583 SNP Detail

Summary

• ID
  rs51852583
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148782032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGCCAAAG AGATCCCTGA ACATTAACTC CTAGGACAGA
  AGGCTTTCCT AGGCTCTTCT GCAATCAAGC CATCTCCTCT AGTTTCTTGC TTCCTCGGAA
  S
  GAACTATTTC TGCCACAATT CTTTTGAAAA GACATCCTCA GAGCAATTAA GATATCATTA
  TGATTCTCAT TCATAAATTT AAACCTCTGG ATGTGGGTAG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61098102	NES16608722	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51852583					SNP	G	G	G	G	G	G	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61098102	NES16608722	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148782032 () rs orientation: forward

Symbol	Name	Function Class
Rr587252	regulatory region 587252	169 bp distal
Rr587253	regulatory region 587253	665 bp proximal
Tssr36091	transcription start site region 36091	693 bp downstream
Tssr36092	transcription start site region 36092	718 bp downstream
Tssr36093	transcription start site region 36093	755 bp downstream
Tssr36094	transcription start site region 36094	783 bp downstream
Tssr36095	transcription start site region 36095	840 bp downstream
Tssr36096	transcription start site region 36096	945 bp downstream