rs51853166 SNP Detail

Summary

• ID
  rs51853166
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152948510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTAACGGT ATATACCCCA
  ATACCCAGTC TAGCAAAAAT ACTTCTAATT ATGCCACAAT AAATGTCATA GGAACTTTGG
  GAACATGAAT GTGGGTTTTT GTGGCAATAC TAGTCTGGCG AAAGCTTTTG GGAAATGGTT
  TGAAAAAAGG AAGGTGTTGG TTCTTTGTGG TTCCCTGCCA TCAAATGGCA CATTGTTAAC
  Y
  GAGATGTTAG GGATGCTGGT TATATCCTTC TAATTTCCCC CTGGGCCTGT CCCAGGACCT
  ACCTCCCTCA TCCTGGAGGC CCAGGAAGCA TGGTTGGGGC AGACCAGAGT GCTGGAGGCC
  TAAGGCCCTC CGGGCATCCC TCACCAACCA TCCCACAGGA GTGTTTAAAT GCCAGGCCTT
  TGTCTCTAGG TGGATAATCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147984161	ENSMUSSNP2355519	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51853166					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152948510 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	1855 bp proximal
Hck	hemopoietic cell kinase	1878 bp upstream
Rr567550	regulatory region 567550	776 bp proximal
Rr567551	regulatory region 567551	1601 bp proximal
Rr567552	regulatory region 567552	1917 bp proximal
Tssr20863	transcription start site region 20863	1066 bp upstream
Tssr20864	transcription start site region 20864	1112 bp upstream
Tssr20865	transcription start site region 20865	1884 bp upstream
Tssr20866	transcription start site region 20866	1899 bp upstream