rs51854349 SNP Detail

Summary

• ID
  rs51854349
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81114445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATACGTT GTATGTATTT
  ATGAAATTCT CAAAGAACCA ATACAGATAT CATATTAAAA GCCCGTGCTT AGTAAGTTCC
  TGTGCTTAAG TACTGTGACA GTGCCAAATT GTACTCTAAA GTTTCTGTAG TTAGTTTACC
  TATGATTGAT TGAAGAGTTT GTGGAACACA CTTCTCAGAG TATTGCTGAA CTCATAAAAA
  Y
  CTAAATATCA AGCCAACTTG TATCTAAGTA CATATATATG TTTACTTCTT ACTCTGAGCT
  AATTTTACAT TTTTTGAAAA CTTGCAGAAC AAGTACAGAA ATATCCTGCC AGGAATACCA
  TATCTCCTAC ATGCCTTCTT CAAGTCTCTT AATTTTGGTA TGTACATAAC TTCGGGATAA
  TTTTCAAAAC ACAGAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss62937160	NES17409714	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs51854349					SNP	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62937160	NES17409714	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81114445 () rs orientation: forward

Symbol	Name	Function Class
Gm33596	predicted gene, 33596	215 bp downstream
Rr393005	regulatory region 393005	1706 bp downstream
Rr393006	regulatory region 393006	560 bp upstream
Rr531544	regulatory region 531544	1068 bp proximal