rs51854889 SNP Detail

Summary

• ID
  rs51854889
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114270129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTT TGGGTTTAAA TCATGCGCGC
  R
  CACACACAAA TAGACGAGGT TTCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss149107128	ENSMUSSNP5574825	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321651946	CHEV_5_114582077	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51854889					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114270129 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16310	CpG island 16310	214 bp distal
Gm73235	predicted gene, 73235	617 bp downstream
Gm73237	predicted gene, 73237	1354 bp upstream
Tssr48056	transcription start site region 48056	1692 bp downstream
Tssr48057	transcription start site region 48057	1624 bp downstream
Tssr48058	transcription start site region 48058	890 bp downstream
Tssr48059	transcription start site region 48059	848 bp downstream
Tssr48060	transcription start site region 48060	142 bp upstream
Tssr52695	transcription start site region 52695	1342 bp upstream
Tssr52696	transcription start site region 52696	471 bp upstream
Ung	uracil DNA glycosylase	within coordinates