rs51854942 SNP Detail

Summary

• ID
  rs51854942
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43057827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AGAGGGCTGG GAAGGATCAG TTGCAAATGT CCAAGGGCCA
  AATGCTCCAT AAAACATGGA GTAGGCAGGT GGGTATGGGG GAGAAGGGAG TGGAGGGAAA
  A
  GGAGATGCAA TGGGCTCGAA ACTTGCAGTT TGTCTTGCAC CGGTACCCAG GGCTCAGCTT
  CCGCCTACAT TTCCCCTCCT CTCTCACTCC AATCAAACAC A                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss149071740	ENSMUSSNP6613632	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs51854942					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43057827 () rs orientation: forward

Symbol	Name	Function Class
Rr645953	regulatory region 645953	189 bp distal
Rr645954	regulatory region 645954	within coordinates
Siglecg	sialic acid binding Ig-like lectin G	within coordinates
Tssr65984	transcription start site region 65984	192 bp downstream
Tssr65985	transcription start site region 65985	183 bp downstream
Tssr65986	transcription start site region 65986	147 bp downstream
Tssr65987	transcription start site region 65987	130 bp downstream
Tssr65988	transcription start site region 65988	118 bp downstream
Tssr65989	transcription start site region 65989	79 bp upstream
Tssr65990	transcription start site region 65990	116 bp upstream
Tssr65991	transcription start site region 65991	849 bp upstream
Tssr65992	transcription start site region 65992	860 bp upstream
Tssr65993	transcription start site region 65993	893 bp upstream
Tssr65994	transcription start site region 65994	1006 bp upstream