rs51855147 SNP Detail

Summary

• ID
  rs51855147
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69342263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGT GTATCCGTCC AGAACATGGG
  Y
  TTTGTGCTTA AAAGCTCACT CTGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss137856822	ENSMUSSNP2750069	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss324083685	CHEV_12_70396476	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51855147					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69342263 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4692	CpG island 4692	929 bp proximal
Klhdc2	kelch domain containing 2	1192 bp upstream
Rr467019	regulatory region 467019	897 bp distal
Rr467020	regulatory region 467020	743 bp proximal
Rr467021	regulatory region 467021	1244 bp proximal
Tssr113629	transcription start site region 113629	493 bp upstream
Tssr113630	transcription start site region 113630	1187 bp upstream
Tssr113631	transcription start site region 113631	1342 bp upstream
Tssr113632	transcription start site region 113632	1439 bp upstream
Tssr113633	transcription start site region 113633	1449 bp upstream
Tssr113634	transcription start site region 113634	1475 bp upstream
Tssr113635	transcription start site region 113635	1483 bp upstream
Tssr113636	transcription start site region 113636	1910 bp upstream
Tssr116496	transcription start site region 116496	1745 bp downstream