rs51855532 SNP Detail

Summary

• ID
  rs51855532
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129917487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTGAATC TAGAAGTCTC
  CTCAACTGTG GCCACAGAGG CTTGTGGTCC CATAAGCTCT CACCACAGAG GATGTTGGTG
  ACCTGAGCCC ATTGATTGGC AGAGATATCT GCAGTGTCAA TCCATGATGC TTCCTGGAAA
  ACACTCTTGT CCTCGTAATG TGGATGAAGA CCATTCCTAC ACATTGCCCA TGAGGTCATA
  Y
  AGTCCTACAG AGTAGCAGTA GGCCATCTGA TGGAGAAACA GGGGACTCTC CTCCCCACCA
  AATGCCCAGG GGAATGGGGG AAGAGTTTTC CTCTGCCACC TTGTCAGGCA CTGTGTATGA
  AAGGAGATCT TATCATAGTT GTTCTGTGGC AGTGGGAAAG CGATCACTGG TGACAGTCCG
  TGAAAACCAT TTTCAGCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss60840607	NES16012822	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs51855532					SNP	T	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60840607	NES16012822	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129917487 () rs orientation: forward

Symbol	Name	Function Class
Chchd2	coiled-coil-helix-coiled-coil-helix domain containing 2	1176 bp upstream
Cpgi16684	CpG island 16684	1025 bp distal
Rr399383	regulatory region 399383	1137 bp downstream
Rr621372	regulatory region 621372	1187 bp distal
Rr621373	regulatory region 621373	686 bp distal
Rr621374	regulatory region 621374	1846 bp proximal
Tssr53498	transcription start site region 53498	1489 bp upstream
Tssr53499	transcription start site region 53499	1341 bp upstream
Tssr53500	transcription start site region 53500	1217 bp upstream
Tssr53501	transcription start site region 53501	1166 bp upstream