rs51855707 SNP Detail

Summary

• ID
  rs51855707
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135778055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTCCTAAGC CCCAGACCTA TGCTTGGCAT AGCAGGTAGT
  CTCTGCTGAG CAGTGAATCA CCTTCTTACT GTCTTCCTGT CTCCCATCCT GCTCCTCTCC
  R
  TATCTCTGTG GCGGTCTTGG TCTTTCTCTC TGGGTCTTTC TCTCATGGTT TCCTGGTTTA
  GCAAGCTCAG GTGGGTACAA ACCTCCAGTC CTCTTCCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145548362	ENSMUSSNP4289449	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51855707					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135778055 () rs orientation: forward

Symbol	Name	Function Class
Rr12645	regulatory region 12645	346 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr227	transcription start site region 227	872 bp upstream
Tssr9020	transcription start site region 9020	1469 bp downstream
Tssr9021	transcription start site region 9021	1449 bp downstream
Tssr9022	transcription start site region 9022	961 bp downstream
Tssr9023	transcription start site region 9023	887 bp downstream
Tssr9024	transcription start site region 9024	851 bp downstream
Tssr9025	transcription start site region 9025	561 bp downstream
Tssr9026	transcription start site region 9026	363 bp downstream
Tssr9027	transcription start site region 9027	245 bp downstream
Tssr9028	transcription start site region 9028	207 bp downstream
Tssr9029	transcription start site region 9029	360 bp upstream
Tssr9030	transcription start site region 9030	395 bp upstream
Tssr9031	transcription start site region 9031	454 bp upstream
Tssr9032	transcription start site region 9032	1037 bp upstream
Tssr9033	transcription start site region 9033	1882 bp upstream
Tssr13894	transcription start site region 13894	1464 bp upstream
Tssr13895	transcription start site region 13895	1420 bp upstream
Tssr13896	transcription start site region 13896	893 bp upstream
Tssr13897	transcription start site region 13897	865 bp upstream
Tssr13898	transcription start site region 13898	420 bp downstream
Tssr13899	transcription start site region 13899	488 bp downstream
Tssr13900	transcription start site region 13900	498 bp downstream
Tssr13901	transcription start site region 13901	1059 bp downstream
Tssr13902	transcription start site region 13902	1920 bp downstream