rs51857093 SNP Detail

Summary

• ID
  rs51857093
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70897087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTATGGAT TTTCTAAGAG
  GTCATGAGGG TACAACACAG ATAATACAAA CGATTGAATA TCAAGTACAG ATGTGACTTC
  ATTTGTAGAT CCCGGTTGAA AGACTTGAAG TTTGTCTATT TTAAGTATCT ATCAGAATGT
  AAATTCTGTA CTTGTAGAAC TCTGAGAGAG TTTACCACCA CCTGGGAGCC ATTTTCACCC
  R
  ACTTCAGTTC ATCTACTGGG AAGGTATGCT ATTTGTACTT GTGCTAAGAA AACTACAGTT
  CAGATAAATA ACACTTGAGC TTCTCCATCT AGATAGGTAG GTGAACAAGA AGGCAATAGA
  TCACATGATT TGAAAGCAAG TGACACAGCT CCTGACTTAC ATTAAGATGA GGCATGAGTA
  GGGGATATGG GTCAGGGATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52652469	NES15473966	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		G	G	G	A		G
ss324416643	CHEV_13_70887846	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51857093					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52652469	NES15473966	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70897087 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	within coordinates
Rr284828	regulatory region 284828	1944 bp distal
Tssr123156	transcription start site region 123156	1114 bp downstream