rs51857239 SNP Detail

Summary

• ID
  rs51857239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88276355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGGGCAT CCTGCGCCCT
  CTGGTGGGCC TCAGGAGCCA TGGCCACACA AGACGGCAGT CAATAGTCTA GCACAAGGTT
  GCAGTGATCC TCACTCAGGT CTGGGCCCCA GACCCAACCT CAGGGAACTG GGCTTGTTGG
  GGTGAAGCCC TGAACCTCTG GCTCTCATAC TCGCCCGTGT TGGACACCCA CATGTTCTGA
  Y
  GAGCTTTCAT CTGCTTCAAT CGGTCCTTGT CCACTTCCTG CTTGGTGAGG ACGAAGAAGA
  GGATACCACA GGGGAAGCAG ATGGCCCAGG CTAGCCCCAC GGCTTTCATG GGGTTCTTGC
  CCCTGTTTCT GGGAATGTAT TCTAGCTCAG GGGAGAGGGG CTCGGGCTCC TCCTTGCATT
  CTGGTGAGCT GTGGCTCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60289487	NES15800013	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51857239					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60289487	NES15800013	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88276355 () rs orientation: forward

Symbol	Name	Function Class
Gm50041	predicted gene, 50041	77 bp downstream
Rr333904	regulatory region 333904	within coordinates
Rr343663	regulatory region 343663	within coordinates