rs51857308 SNP Detail

Summary

• ID
  rs51857308
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72893129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCGGGCGGA AGAGGCGCTG
  TCTTCGGGTA AGACCCTGGG GCGCAGGTCG GGCTGATGGG GCGGCCGCGG GCTGCAACTC
  GTACCTTCGG GCGCAGCGCC GGGAGGCTTT CTCCTGGTGG ATGCCTTGGT CCTCGGGCGA
  CCTCGGGCGG AGGGCGCGAC CTGGCAGGTG TTAGGCGCGG GCTCGCAGGC TGCAGCCCCG
  S
  GAGCTCGGAG CTGGGCGCCC CGGGATTCAG GTGCAGCTGC ATCCGTATGC TGAGATGCCG
  CGTGCGTCAC TCTGAGCCGG CTCGGAGGTC CCAGGTGTCA GGAATAGAAA AGTGTGCACC
  CCAGAAGTAT ACTCCTATTC AGCCCCGAAG CCTGTTCTCC GCCCGTTCTT CACGCTTCCC
  CTCCGGGTCC TTACCAGCGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61420828	NES16804895	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs51857308					SNP	C	C	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61420828	NES16804895	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72893129 () rs orientation: forward

Symbol	Name	Function Class
Ccpg1	cell cycle progression 1	within coordinates
Cpgi22024	CpG island 22024	within coordinates
Gm44503	predicted readthrough transcript (NMD candidate), 44503	within coordinates
Pierce2	piercer of microtubule wall 2	471 bp upstream
Rr401512	regulatory region 401512	225 bp downstream
Rr682884	regulatory region 682884	489 bp distal
Rr682885	regulatory region 682885	232 bp distal
Rr682886	regulatory region 682886	within coordinates
Rr682887	regulatory region 682887	46 bp distal
Tssr2935	transcription start site region 2935	532 bp upstream
Tssr86066	transcription start site region 86066	441 bp downstream
Tssr86067	transcription start site region 86067	423 bp downstream
Tssr86068	transcription start site region 86068	280 bp downstream
Tssr86069	transcription start site region 86069	205 bp downstream
Tssr90501	transcription start site region 90501	550 bp upstream
Tssr90502	transcription start site region 90502	505 bp upstream
Tssr90503	transcription start site region 90503	450 bp upstream