rs51857474 SNP Detail

Summary

• ID
  rs51857474
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:122296013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGATGAACTG CTGGGCGTAC CCCATCTTGT CTCACACGCC
  TGCCTTGCTC GCAGTGTAAC CCACTCTTCT TTAAAGCCAC AGTCGAAGAG GCATCTCAGC
  Y
  TCCTCTGTGG CCGGATAAAA TGGACAGACA ACACAGAAGT CCTTGGTCTG CTAAGCCGGA
  GGTTTTGCAC TCTGTTACCT GATTGAAGAA ATACGATGGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52524807	NES15586795	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51857474					SNP	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52524807	NES15586795	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:122296013 () rs orientation: forward

Symbol	Name	Function Class
Gm63354	predicted gene, 63354	537 bp upstream
Gm63496	predicted gene, 63496	1324 bp downstream
Rr498317	regulatory region 498317	548 bp distal
Rr498318	regulatory region 498318	227 bp distal
Tssr127312	transcription start site region 127312	235 bp downstream
Tssr130315	transcription start site region 130315	518 bp upstream