rs51857521 SNP Detail

Summary

• ID
  rs51857521
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156188337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATGGCCT CAAAAAACAA
  AACAAAACAA AACAAAACAA AACAAAACAA AACAAAACAA AAACAAAAAC AAAAAACCCC
  AATAAATCAG AGTCTCATCC AGGTGCAGTG GTGTATGTCT GTGCTCTTGC AGTCCAAGCA
  CCTGAGACAC TGACATCAGA AGATTGATTC AAAACTGAGG CCAGCCTGGG CTATATAGCG
  Y
  ATTCCAGGAC ACCCTCCTGG TGTTGGACAG CCTATGGGTA TTGGCAAGTA TCAACCTAGT
  GTGATATATA ATAACTGTAC TGTCCTAAAG CCACCCAGTT CCACCTATGC CTACCCCACC
  TTCCAGCCAG AATCATAGGT CTGTTTTTTT GTTTTTGTTT TTTTTTTTTT TGGTTTTGGT
  TTTGGGTTTT TTTTTGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss148070357	ENSMUSSNP5415655	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs51857521					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156188337 () rs orientation: forward

Symbol	Name	Function Class
Cnbd2	cyclic nucleotide binding domain containing 2	within coordinates
Gm14253	predicted gene 14253	785 bp downstream
Rr568246	regulatory region 568246	1292 bp distal
Rr568247	regulatory region 568247	1545 bp distal
Tssr27051	transcription start site region 27051	1554 bp downstream
Tssr27052	transcription start site region 27052	1614 bp downstream