rs51858387 SNP Detail

Summary

• ID
  rs51858387
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37165996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTTAGAT TTGAGATTGC
  TGTGTCATCT GTTTTGTTTT TGTTTTGTTT TTTTTAGAAG CCAGCAACTG GCTATTTTGT
  TAAGTTTTAT AGTTTATAAA TGACGGTAAC TAACAAAATG TTTTAACACT CTTCCTTCCC
  CACCTCTTGC AGACCAAGTA CACTGCTCCA AAAGCTCAAT GGAGATTGGC TAAAACCTCT
  Y
  CTCCCAGCAC AAGGGTGACC TTGTGGTCCT GGGAGCAGCT GCTGTCAATG CCAGCTCATG
  CTTTTAAGGG TGACCACCCA GTGTTGGAGC AGCTGCAGCT CTGATCCCAG AGATCTTGCC
  CTAGCTAGGT ATCCCTGAGA CTGGAAGGGT CAGACAGGCT TAATAGAACC AGTGATTTCT
  GGCTTGTTAA CTAATCTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss136309784	ENSMUSSNP4604914	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs51858387					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37165996 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	472 bp proximal
Gm10177	predicted gene 10177	1519 bp downstream
Gm48081	predicted gene, 48081	798 bp upstream
Gm65989	predicted gene, 65989	1335 bp downstream
Rr676656	regulatory region 676656	within coordinates
Rr676657	regulatory region 676657	704 bp proximal
Rr676658	regulatory region 676658	809 bp proximal
Rr676659	regulatory region 676659	1028 bp proximal
Rr676660	regulatory region 676660	1336 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	within coordinates
Tssr88821	transcription start site region 88821	657 bp downstream
Tssr88822	transcription start site region 88822	681 bp downstream
Tssr88823	transcription start site region 88823	703 bp downstream
Tssr88824	transcription start site region 88824	729 bp downstream
Tssr88825	transcription start site region 88825	744 bp downstream
Tssr88826	transcription start site region 88826	830 bp downstream
Tssr88827	transcription start site region 88827	923 bp downstream
Tssr88828	transcription start site region 88828	946 bp downstream
Tssr88829	transcription start site region 88829	969 bp downstream
Tssr88830	transcription start site region 88830	985 bp downstream
Tssr88831	transcription start site region 88831	1030 bp downstream