rs51858612 SNP Detail

Summary

• ID
  rs51858612
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57414593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATGGGAAT GAGAACTATC CTTCTTGTGA CTCCTAGTTG
  CTAAGTCCTC AAGCTGCTAT GTTTTATGGG GTCTGAGCAG GGGTCCCTTC CATGACTTTC
  Y
  CTTGTCTTTA ACTGGACTTG GTATTTATTC TGAGCATAGC TCAGACAAGA CTTTATATAA
  TTCACTAGAT AGCATTAGTA AACTGCTGGG CAGCTGCTAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62813015	NES17357896	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51858612					SNP	T	C	C	C	C	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62813015	NES17357896	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57414593 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9396	CpG island 9396	1479 bp distal
D17Mit252	DNA segment, Chr 17, Massachusetts Institute of Technology 252	207 bp proximal
Gm11110	predicted gene 11110	1651 bp upstream
Rr529281	regulatory region 529281	1181 bp distal
Rr529282	regulatory region 529282	352 bp proximal
Tnfsf9	tumor necrosis factor (ligand) superfamily, member 9	within coordinates
Tssr145376	transcription start site region 145376	950 bp downstream
Tssr148901	transcription start site region 148901	1645 bp upstream