rs51858736 SNP Detail

Summary

• ID
  rs51858736
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156939081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATTATGTAG ATCTGGACGG AGGCTGAACC TCTGTAGACA
  GAACCCAGGG GGCTTGAGAG GAAAGAGCTT GTTTTCAGGC ACGAGAGTCT TTGAGCTTAC
  R
  CCCCCATACC CTTCCCGTGC ATGGTCTGCC TTCTGCTGGA AAGGAGCCGG CTATAGCCTG
  CTTTTATTTT GGTGAGGAAA ACCAAGTACC TGGGACCTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148091851	ENSMUSSNP138636	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320584155	CHEV_2_156922897	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51858736					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156939081 () rs orientation: forward

Symbol	Name	Function Class
Rr568431	regulatory region 568431	1484 bp distal
Rr568432	regulatory region 568432	1927 bp distal
Samhd1	SAM domain and HD domain, 1	373 bp downstream
Tldc2	TBC/LysM associated domain containing 2	679 bp downstream
Tssr27104	transcription start site region 27104	1297 bp downstream
Tssr27105	transcription start site region 27105	1342 bp downstream
Tssr27106	transcription start site region 27106	1431 bp downstream
Tssr27107	transcription start site region 27107	1575 bp downstream
Tssr27108	transcription start site region 27108	1701 bp downstream
Tssr27109	transcription start site region 27109	1773 bp downstream
Tssr27110	transcription start site region 27110	1827 bp downstream
Tssr27111	transcription start site region 27111	1978 bp downstream