rs51858821 SNP Detail

Summary

• ID
  rs51858821
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:101006533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTAC TTGACTACAG TCATCCCTTT
  C
  CCATGGAACA CAGGACACCT CTTAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148929822	ENSMUSSNP100431	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321627731	CHEV_5_101287686	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51858821					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:101006533 () rs orientation: forward

Symbol	Name	Function Class
Gpat3	glycerol-3-phosphate acyltransferase 3	Intron
Rr399195	regulatory region 399195	1774 bp downstream
Rr615577	regulatory region 615577	1655 bp distal
Rr615578	regulatory region 615578	1722 bp proximal