rs51859778 SNP Detail

Summary

• ID
  rs51859778
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124019095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGGCAAA ATGAGTGCTG
  TTTTGTGATA AATGTGAGTT AATATTGTAT TTCTTTCTAA CATTTTAAAA CATGCCATTT
  TGAACTATTT CATAAAAACT AATCAAGCTG TATAAAAAAA TGGATTAAAA TATTCCCTTT
  TTTTAACTAT CTTGGTGGAA AGCCTTTGTT GTTTGTATGT TCTCATAATA AATATTCTAA
  S
  TACTAGTTTT GTGTGATATC CCCGAGGAAA ACAGTGTGAA CGGTGTGACA CATGACAGTA
  GACTAATTAT TTACAGCAGC TTCAAGGGAA GGTAAAGAAT GTCATTTCTA CACCTACGAA
  AAATGGTGTA AATCCATCAG CTTGCTTTAC TTTAATATCT TCTGTAATGT TCAAAGTGCT
  GAACAATAGC GGCTAGAGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60445859	NES15938724	PERLEGEN	MM_PANEL2	f	SNP			C	G	C	C	C	C	C	C	C
ss135782565	ENSMUSSNP1425824	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51859778					SNP	G	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445859	NES15938724	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124019095 () rs orientation: forward

Symbol	Name	Function Class
Rr584579	regulatory region 584579	733 bp proximal