rs51860357 SNP Detail

Summary

• ID
  rs51860357
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48124222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAAAGGG TTTTGTAACA
  CAAGATGAGG CAATACAAGA GCAAAGTGAC TTCCAGCTGA GTCACTAAAC CAGGGAAGCT
  GGCTTAGTTT TCCTGAGAGG AAGAGGTTTG GCTAGTCACA ATCCTTTGTT TGCAATAAGC
  GTAGCCATTT ATTTGAGCCA ATCACAGTCT TGCCTCGTAG CATCAATCCC AGTGATTGAA
  R
  CTTGTGTCTT AGACCAGTCA TAACTTTACC TCTTAACGCC AGGCATCCAT CTGCTAGGGC
  ATCTTCAGGT CAGTGCTTCC CCACTGGCCA GGCAGAAATG ATTCCAGAGT CATCTAGAAA
  CCATCAGACA GGACTTGTGA AAACAGAAGT CTAGAACCAA CTGTTTCCAG CTCGCTTTGA
  TCCCAATACT CGGAAGGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60455093	NES16441067	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51860357					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60455093	NES16441067	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48124222 () rs orientation: forward

Symbol	Name	Function Class
Rr516623	regulatory region 516623	290 bp proximal
Tssr138650	transcription start site region 138650	4 bp upstream
Tssr138651	transcription start site region 138651	55 bp upstream