rs51860637 SNP Detail

Summary

• ID
  rs51860637
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81199561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TGGCCGCGGC TCTGGCTCTC TGCAGCCTCC TCATCTGGCC
  CATCCGCATT CGCAACCGTG GGTCTCCATT ACTAGGACTT GGGTGGGGGC GGGGTGCAAC
  M
  TGGGACCCGC CCTTCCCAAC GCCACTCCAC TCCTTATTAC AGGGGACCCG CGAGACCGGC
  CTTGACCTCT GGCTCCCCAG GGCGACGTTA TGAAGGACCA G                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147179531	ENSMUSSNP2719236	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51860637					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81199561 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1975	CpG island 1975	104 bp proximal
Mfsd12	major facilitator superfamily domain containing 12	within coordinates
Tektip1	tektin bundle interacting protein 1	297 bp downstream
Tssr94743	transcription start site region 94743	299 bp upstream
Tssr94744	transcription start site region 94744	558 bp upstream
Tssr94745	transcription start site region 94745	593 bp upstream
Tssr94746	transcription start site region 94746	670 bp upstream
Tssr94747	transcription start site region 94747	688 bp upstream
Tssr98595	transcription start site region 98595	1119 bp downstream