rs51862373 SNP Detail

Summary

• ID
  rs51862373
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:106767306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACT CTTCTGGCTA GAAAGTTAAG
  Y
  CCAGAAAGGG TATGCAGAGA TGGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136941090	ENSMUSSNP140399	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss323187627	CHEV_9_106792438	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51862373					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106767306 () rs orientation: forward

Symbol	Name	Function Class
4930524O07Rik	RIKEN cDNA 4930524O07 gene	1404 bp upstream
Cpgi22278	CpG island 22278	1257 bp proximal
Manf	mesencephalic astrocyte-derived neurotrophic factor	Intron
Rr368849	regulatory region 368849	1793 bp upstream
Rr686409	regulatory region 686409	1120 bp proximal
Rr686410	regulatory region 686410	1298 bp proximal
Rr686411	regulatory region 686411	1680 bp proximal
Rr686412	regulatory region 686412	1848 bp proximal
Rr686413	regulatory region 686413	1862 bp proximal
Tssr86942	transcription start site region 86942	74 bp upstream
Tssr91353	transcription start site region 91353	1259 bp downstream
Tssr91354	transcription start site region 91354	1273 bp downstream
Tssr91355	transcription start site region 91355	1287 bp downstream
Tssr91356	transcription start site region 91356	1294 bp downstream
Tssr91357	transcription start site region 91357	1801 bp downstream
Tssr91358	transcription start site region 91358	1824 bp downstream
Tssr91359	transcription start site region 91359	1858 bp downstream