rs51862664 SNP Detail

Summary

• ID
  rs51862664
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101937875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGAAACACA AGACGTGTTT TCTCATCCCC CACTTCTCCA
  CACACACACA CACACACACA CACACACACA CACCCTCATG TGACCCGGAA CTCTCAAAGC
  S
  ACTCTCTCCA CTTTAATCCA CCCAGATCTT TGCGAATTCT GTGGACAATG CCCGCATCGT
  CTTGCAGATC GACAATGCCC GCCTTGCCGC CGATGACTTT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	WSB/EiJ
ss52582798	NES15651168	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	WSB/EiJ
rs51862664					SNP	G	C	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52582798	NES15651168	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101937875 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7794	CpG island 7794	968 bp distal
D15Mit40	DNA segment, Chr 15, Massachusetts Institute of Technology 40	within coordinates
Krt18	keratin 18	within coordinates
Rr311450	regulatory region 311450	within coordinates
Tssr133313	transcription start site region 133313	1229 bp downstream
Tssr133314	transcription start site region 133314	1205 bp downstream
Tssr133315	transcription start site region 133315	441 bp upstream