rs51862866 SNP Detail

Summary

• ID
  rs51862866
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:13010719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGTGGTA CTACCCATTT
  GCCAGGAACT ACCTACAAAC TTACTCTTAA CACGAATCTT CTGGTCAGTC AGAAAGTTCC
  AGATGGGTAG ATTTTAATCT AAAATAACCC CAGCTCCCAG AACAGGATCT GGTTCTACAC
  TGACTGGAGA TATCTTCCTT TCTTATGGCT TTCTTCACAG TTCAGTCTTC CAGGCTGCTT
  K
  TTGTAGATGT GCAAGACCTG GCCCACCAAC TTCGCTAGCT GGCTCTGGTA TTTGGGGGAC
  AATCAATTCT CCCCTGTCTT TTGGCTTGTT TCAGTATGCC TCTCACTCTC TACAATGGCC
  TCTACTAAAC CCTGTATATC AAGTCTGGGT TGTTTTGTAT TGAGTCTTAT TTATTTCCTG
  GCTCAGACTC CATCTCAGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60970726	NES16158009	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51862866					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60970726	NES16158009	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:13010719 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18339	CpG island 18339	1524 bp proximal
Lig1	ligase I, DNA, ATP-dependent	520 bp upstream
Rr400108	regulatory region 400108	1848 bp upstream
Rr642459	regulatory region 642459	906 bp proximal
Rr642460	regulatory region 642460	1341 bp proximal
Rr642461	regulatory region 642461	1633 bp proximal
Rr642462	regulatory region 642462	1880 bp proximal
Tssr64537	transcription start site region 64537	362 bp upstream
Tssr64538	transcription start site region 64538	461 bp upstream
Tssr64539	transcription start site region 64539	1751 bp upstream
Tssr64540	transcription start site region 64540	1985 bp upstream
Tssr70659	transcription start site region 70659	1868 bp downstream
Zswim9	zinc finger SWIM-type containing 9	Intron