rs51863628 SNP Detail

Summary

• ID
  rs51863628
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:118686906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCAGAGG AGCTTGACCT
  TCCTCCCAGT CTTTTATCCT TCTTCCCAAC ATCACTTGCT TTCCTGCACT TTATGCAATT
  CACAGCTAAC ATTCTAACGA TTATCCGTCA ATCACCCACC TTCGAGACTA AAATGCAATC
  CCCAGAGACC CCTTTGCTGT GTGCCAGCGT GTGCCCAGGA GGCCAGATAG GAGGAAACAG
  Y
  GGAGGAGACG GTACAGTGAA GTGAGATCTT TCTGGGGAGA GGGAAATGCC AGTGTCTGCT
  TCAGGGCAGT ATCATCTTGG CCAACTTCAT GCCTTCCAGC CACACAGAGA CTGTGAAATG
  CCTGGGACAC AGTGTAGCTG AGGAAACCCT GCCATGATGA TACACACCTT TCCAAAGAGC
  TATGCTTCCC TCCCTCACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss61322067	NES16929605	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		T	T		T
ss323503871	CHEV_10_118288057	CHEVERUD	SCREENING_POP	f	SNP											C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs51863628					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61322067	NES16929605	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:118686906 () rs orientation: forward

Symbol	Name	Function Class
Gm40776	predicted gene, 40776	1869 bp downstream
Gm67702	predicted gene, 67702	1880 bp downstream
Rr226050	regulatory region 226050	1695 bp proximal