rs51866799 SNP Detail

Summary

• ID
  rs51866799
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58736180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGAGGGA AAGTTCTACA
  GAACTGCATC TTCATTCACT AGTGTCTTAG TCAGGGTTTC CATGACTGTG AAGAGACACC
  AGGACCATGG CAATGCTTTT AGAGGAAAAC ATTTCATTGA GGCTCATTTA CACTTTTCAG
  AGGTTTAGTC CATTATCATC ATGGTGGAAA GCATGGCGGC ATGCAGGTAG ACATGGTGCT
  A
  GAGAAGAAGC TGAGCATTTT CCATCTTGCT CCTCAGACAG GAAAAGGAGA CTGCCACACT
  AGGCCTAGCT TGAGCATAGG AGACCACAAA GCCCATCTCC ACAGTGACAT ACTTCCTCCA
  ACAAGGTCAC ACCTACTCTA ATAAGGACCC AAGAGTGCCA CTCCCCATGG CCAAGCATTC
  ACACACACTA GTCGATGTGC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132214912	ENSMUSSNP4998851	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51866799					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58736180 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2935	CpG island 2935	1675 bp proximal
Gm12258	predicted gene 12258	1804 bp upstream
Rr246822	regulatory region 246822	1420 bp proximal
Rr402593	regulatory region 402593	1537 bp upstream
Tssr101753	transcription start site region 101753	1799 bp upstream