rs51870119 SNP Detail

Summary

• ID
  rs51870119
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:41341663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTATGGCTT CATAGTCATA
  AATAGCAATG CCGTTTGAGA ATAAGAAAAA AATCAAATAT GAGAATCCTG TCAAATAATG
  ACTCCTCAAT CTAAGGGGGG ACAAGACAGG TAGGCAGATA CCATAAAGAA TAACTGTGAC
  TGCCTTGGGA ATTCATTCAA GTGGGTTAGC ATTAAAATAT GCAAGAATAA AGTAAGTAGT
  R
  TGAATTTTTG AGAAATGGCA ACATAATATT AGAATTGAAG TTTTATGAAA TAGTTCACCA
  TATAAGTGGC CAAGAACGGA ATGACCCAGA ATGGAAGCAG TAAGTGACTG AAAGACAGCC
  ACTAAAATTC CCCTTTGAGG GGTCTGTGCA ATAATGCAGT CTGACTAGAA TAGAATACAT
  AGCCCAGGGG GGAACCTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60601037	NES16305922	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51870119					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60601037	NES16305922	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41341663 () rs orientation: forward

Symbol	Name	Function Class
Rr662620	regulatory region 662620	1235 bp distal
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	within coordinates
Tssr76994	transcription start site region 76994	1980 bp downstream
Tssr76995	transcription start site region 76995	763 bp downstream
Tssr76996	transcription start site region 76996	707 bp downstream
Tssr76997	transcription start site region 76997	593 bp downstream
Tssr76998	transcription start site region 76998	214 bp downstream
Tssr76999	transcription start site region 76999	899 bp upstream
Tssr77000	transcription start site region 77000	1700 bp upstream
Tssr77001	transcription start site region 77001	1839 bp upstream
Tssr77002	transcription start site region 77002	1859 bp upstream
Tssr77003	transcription start site region 77003	1980 bp upstream
Tssr81068	transcription start site region 81068	1522 bp upstream