rs51870679 SNP Detail

Summary

• ID
  rs51870679
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24568974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTC CGTGTGATTG TGTTTACATT
  C
  GTTTCAAATA ACAATATATT CAGTT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145351342	ENSMUSSNP3445081	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325330793	CHEV_17_24486945	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51870679					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24568974 () rs orientation: forward

Symbol	Name	Function Class
Abca17	ATP-binding cassette, sub-family A member 17	within coordinates
Cpgi8716	CpG island 8716	823 bp proximal
D17Jcs14	DNA segment, Chr 17, John C. Schimenti 14	1065 bp distal
Rr405082	regulatory region 405082	1718 bp upstream
Rr523280	regulatory region 523280	869 bp proximal
Rr523281	regulatory region 523281	1019 bp proximal
Rr523282	regulatory region 523282	1219 bp proximal
Rr523283	regulatory region 523283	1904 bp proximal
Tssr143021	transcription start site region 143021	1937 bp upstream
Tssr143022	transcription start site region 143022	1954 bp upstream
Tssr146725	transcription start site region 146725	1053 bp downstream
Tssr146726	transcription start site region 146726	1072 bp downstream