rs51872527 SNP Detail

Summary

• ID
  rs51872527
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:61911928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTGGCAG GCAGCCTGCC
  TGGTTGCTGA GGCCTCTGTC TTCCATGTCC GGGACCTTCT GTCTGCCTGC CCAATCTAGC
  TGCTATCCTT AGGCACCTCA GCTGTTGACT CTCTTGGATC ATAGGTTACC TTTGATTCCA
  TTTTGTGCAA GATGCCCTGA ATTTGTTCAT ATTAAGGGCA GACCAGCATT TTCCTGGGGA
  Y
  TCTGAGGACC TTGGATATTT GTTGAACTCT ACTACACACA CACACACACA CACACACACA
  CACATTTGAA AATACCATGA GTATGGTCTA TGCATCATTT TCACCTCCTC TCTTCCCTGC
  AACTCCTGAT GTGACCCCAA GCCCTCTCAA ATCTCTAACT TCTTTTTAAA TCACACATAA
  ACATAATATA TAAATATATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52563381	NES15634463	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51872527					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52563381	NES15634463	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:61911928 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7133	CpG island 7133	1794 bp distal
Gm54427	predicted gene, 54427	1878 bp downstream
Pvt1	Pvt1 oncogene	within coordinates
Rr390819	regulatory region 390819	3 bp downstream
Rr503088	regulatory region 503088	1949 bp distal
Rr503089	regulatory region 503089	682 bp distal
Rr503090	regulatory region 503090	421 bp distal
Tssr131428	transcription start site region 131428	817 bp downstream
Tssr131429	transcription start site region 131429	787 bp downstream
Tssr134486	transcription start site region 134486	925 bp upstream
Tssr134487	transcription start site region 134487	907 bp upstream