rs51872616 SNP Detail

Summary

• ID
  rs51872616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:83721046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTACTAT ATGTAGTTTA
  ATTACTAATA ATCTTTTCTT TCACATGCCT GCAAAACCAC CGAATAGGTT ACTACAGTAA
  TAATAATCTC TTTCTCTAGC CCTCCTGAAA ATAATACTTG AAACAAACCA TAGAGTATAG
  TTTATGTATA AAAATTAGGT TAATAAATAT TTATACTAAA AAGCAGAAAT TAAGCAAAAG
  Y
  TATGCACCGG TGGTGACCTT CCTAATTCTT TGCATTTTTC CTGATGGCCT TGAAATGTGA
  GGACACCATT GATCTGTTGC TATTCTATTT GTGTGGACTT TATACAAGTC TACATTTTAT
  GAATTTCAGG AGGCAACACT TCAGTTACTG AATTGAGCAT TGTCCTTGTG CGGAAAACAA
  AATAAAAGTC GAATTAGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61892713	NES17096033	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51872616					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61892713	NES17096033	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:83721046 () rs orientation: forward

Symbol	Name	Function Class
Gm55122	predicted gene, 55122	within coordinates
Mef2c	myocyte enhancer factor 2C	within coordinates
Rr399	regulatory region 399	678 bp distal
Rr1598	regulatory region 1598	within coordinates
Rr483252	regulatory region 483252	811 bp distal
Rr483253	regulatory region 483253	190 bp proximal
Rr483254	regulatory region 483254	706 bp proximal
Rr483255	regulatory region 483255	1881 bp proximal
Tssr4132	transcription start site region 4132	849 bp upstream
Tssr120502	transcription start site region 120502	570 bp downstream
Tssr120503	transcription start site region 120503	537 bp downstream
Tssr120504	transcription start site region 120504	514 bp downstream
Tssr120505	transcription start site region 120505	650 bp upstream
Tssr120506	transcription start site region 120506	1548 bp upstream
Tssr123327	transcription start site region 123327	917 bp upstream
Tssr123328	transcription start site region 123328	809 bp upstream
Tssr123329	transcription start site region 123329	773 bp upstream