rs51873157 SNP Detail

Summary

• ID
  rs51873157
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:56819808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CAGAATATAT AATAGTTAGG GATTGAGGTT TAGCCAGAGC
  GCCTTTATGC AAAGGACACA TATGTAACTA TGTACAGTAA AAAGCTGTAC ATCTGGCATG
  Y
  TGGGGGAAAA TTGGAGGCAT CAGTCAGTCA AAAGTTCTGA CTAACAATTT CATTGCCTTT
  CATATTTCTT GTTTTCTGTC TTGGCCTCTC TACTAAAGCC T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	MSM/Ms
ss149129514	ENSMUSSNP2404127	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	MSM/Ms
rs51873157					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:56819808 () rs orientation: forward

Symbol	Name	Function Class
Rr16634	regulatory region 16634	1393 bp proximal
Rr27206	regulatory region 27206	1358 bp distal
Rr371319	regulatory region 371319	789 bp downstream
Tssr11738	transcription start site region 11738	1516 bp downstream
Tssr11739	transcription start site region 11739	1567 bp downstream
Tssr11740	transcription start site region 11740	1742 bp downstream