rs51873436 SNP Detail

Summary

• ID
  rs51873436
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:54947083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAAAAAGC TGTCACACCT
  GACACGGCTC CCAGACTTTC CTCTGTCTAT TCACTGTTCC TAAAACAGTT GCACATAGAA
  ATGTGGTATC TTTTTAAAGT TACTTTAGTG CCAAGTGTGG TGGTGCACAC TCACAATCAC
  AATGAAAGCA GAGATCATGA CTTCAAGATG ACTGTGAGCT GCACAGCACA CCCAGATCAA
  M
  CTGAACCCAC AAGACAATAA TCTACCTAGT AATCTCAGTG ACTTCGTTAC ATTAATTAAT
  TACGCTCTGT AAAAAGCTAC CCTTTGCCGG GTGTGGTGGC GCACGCCTTT AATCCCAGAA
  CTGCACTCGA GAGGCAGAGG CAGGCGGATT TCTGATGTTG GAGCCCACAG CTGACTCTGG
  CTGTGTCCAA CAAAATGTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60735295	NES16377557	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51873436					SNP	A	A	A	A	A	A	A	A	A	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60735295	NES16377557	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:54947083 () rs orientation: forward

Symbol	Name	Function Class
Ankrd44	ankyrin repeat domain 44	within coordinates
Rr1418	regulatory region 1418	within coordinates
Rr411098	regulatory region 411098	1966 bp distal
Rr411099	regulatory region 411099	175 bp distal
Rr411100	regulatory region 411100	1027 bp proximal
Tssr11696	transcription start site region 11696	749 bp upstream