rs51873490 SNP Detail

Summary

• ID
  rs51873490
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85870272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGTGGCT AGTCTGGAAC
  TCTACATAGA TCAGGCTGGC CTGGAACTCA CAGAGATCCA TCTGCCTCTT CCTCCTGAGT
  GCTGGGATTA AAGGTGGGTG CGGCCAGGTG CAGCAAAGTT CCCATTTTTT GAGGAAGCTG
  GTAGGAGAGA GAGCTAGGTT CGGTACTTTT TGTTTAGCTC AAGCCTCGCT GAGTAGTGAT
  K
  TCCATCAGCT CTAAAGGGAT CCCACAGAGA CAATTTGTCA TAGCCACCAT CATATTGGCC
  CTTCATTTAC CTATTGTCAG GCTAACTGCT TTGGCCTGAA AGCTGTAAGA AACTATCAGG
  CTTCCCTTAT CACTGTGGTA ATGTTTCAGT ATGATTCCCT ACTACCCAGT GTATATAGAC
  ATCAAGTGAA GTGATGACGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52451572	NES15428292	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51873490					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52451572	NES15428292	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85870272 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4904	CpG island 4904	969 bp proximal
Erg28	ergosterol biosynthesis 28	within coordinates
Rr258254	regulatory region 258254	1072 bp distal
Rr265707	regulatory region 265707	471 bp distal
Rr265708	regulatory region 265708	within coordinates
Rr268757	regulatory region 268757	1672 bp distal
Tssr114435	transcription start site region 114435	1135 bp upstream
Tssr114436	transcription start site region 114436	1420 bp upstream
Tssr117107	transcription start site region 117107	998 bp downstream
Tssr117108	transcription start site region 117108	1008 bp downstream
Tssr117109	transcription start site region 117109	1062 bp downstream
Tssr117110	transcription start site region 117110	1347 bp downstream
Ttll5	tubulin tyrosine ligase-like family, member 5	1145 bp upstream