rs51875130 SNP Detail

Summary

• ID
  rs51875130
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:66268780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A ATGTGGACGT GTTAGCTCAA TAAACCCTTT CCTCCCTAAC
  TTGCTTCTTG ATCATGTTTT GTGCAGGAAC ACAAAGCCTG ACTAAGACAC CCAATTAGGC
  Y
  CAGCCGCAAT CTTGTGTTAG AACAATCACT TACTTTACAG AGAGAAACTG AGCACCAAAG
  GGGCCAGTGA TATGTGCAAA GTCGCTCTGA GCATATAAGA G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss146716928	ENSMUSSNP4699844	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs51875130					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66268780 () rs orientation: forward

Symbol	Name	Function Class
Rr558183	regulatory region 558183	1951 bp proximal
Scn1a	sodium channel, voltage-gated, type I, alpha	Intron