rs51877560 SNP Detail

Summary

• ID
  rs51877560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20788413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGAAAAG ATGGAATCTA
  GAGCAGATGT TAGAAGGCAT TCCAAACCAG CAAGAAACAA AACAGTTGTC AGCATGGAAT
  CCTAAATAGG GCAGCTTAAC AGGTGAATAA GCAGCATCCA ATATGCAGGC CATTTTCTGA
  GATCTTGGCT CTTTCTCCAG CTGCTAATGG TTCTCTTTTG AAGTTAGAGC AGAACTCTAC
  Y
  GTCTGAAGAG GAATCTGCAA AGAACAATGT AGGTTTTCTG ATAAATGGCA TATGGTTCCT
  TCTCCCCCAA AGTTCACAGT CAACTGAACA GACAAAGACT ATTATTTGTT TTATAAAGAA
  AACAAAAATG CTTAATAATG TAGTCCAGTG TGTTTTCCAA AAGAAATGAT GGGGTGATGT
  CCCCAGGAAT AGATTACTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61757687	NES17682689	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51877560					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61757687	NES17682689	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20788413 () rs orientation: forward

Symbol	Name	Function Class
Elmo1	engulfment and cell motility 1	within coordinates
Tssr118599	transcription start site region 118599	1151 bp upstream
Tssr118600	transcription start site region 118600	1194 bp upstream