rs51877917 SNP Detail

Summary

• ID
  rs51877917
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:69760891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATACTGGG CACAATGGCT
  TAGGTTTCAA AGCGCTTTAT TAACATCCTA GACTAACCAC CCTGGTGTGT ACATGAGAGC
  GTGCCATTGA AACGGCCTCT GCTCGGGCGT ACCCCGGTGG AACCTGCGGA GAGCTGGCTC
  TCTCATTGCC CACAGAAGCA GGACGCTTCC CCATAGGAGA GAAGCCCCAC GTTTCAGAGT
  Y
  GAGACGTTTT AATAGGAAGG TGGCAAGGGT CACCTGCTGA GCTAAGTCTT CTCCTCCTGG
  CCACTGTCAC CCCATTCTTC GGGGACCCTC TCAGAAGTGA GAAGCAGAGA CTCTCTGAGC
  GTGTTCACGA ATGGAGAGAA CTCTTGCCCC AACTCCAGCA GAACACTTCC CCAGTCTCTG
  TCTCTGTCTC TGTCTCTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61285580	NES16896171	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51877917					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61285580	NES16896171	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:69760891 () rs orientation: forward

Symbol	Name	Function Class
Ank3	ankyrin 3, epithelial	within coordinates
Rr433504	regulatory region 433504	1057 bp distal
Rr433505	regulatory region 433505	within coordinates
Rr433506	regulatory region 433506	1083 bp proximal
Tssr93970	transcription start site region 93970	910 bp downstream
Tssr93971	transcription start site region 93971	423 bp upstream
Tssr93972	transcription start site region 93972	705 bp upstream
Tssr93973	transcription start site region 93973	739 bp upstream
Tssr93974	transcription start site region 93974	768 bp upstream
Tssr93975	transcription start site region 93975	794 bp upstream
Tssr93976	transcription start site region 93976	917 bp upstream