rs51878569 SNP Detail

Summary

• ID
  rs51878569
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:46387211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTCCGGG TAGCCAGGAG
  CCATGCTGGC AAGGCATCTG TGCAGGGCAG CCTAGTTCCT GGCTGACTAG TGTTTTGAAG
  ATTGCTTCTG AGTGGGTAGT GGCTCTTGCT AACTTAATCA CCCATTTCAA TGGCACCTCT
  GTATTAGTTG TGATGAACTT GTCCCATGTC ATGAGAAAAA CGGGGCTGAC CTTGCCATAC
  Y
  GTTTGCTCTG ATCTTGTTTA AGTGTGAGGG AAAGTCCCTG TGCAGAATAG GGGGCACCTG
  GTTTTATGTC ACCTACATGG TCATCAAGAC AGAGTTGCCT GTTAGAGGTA TGGAAGCAAA
  GACCAAGGGT AGTTATACTA TTTTCTTTCT GTTATAAGCT TTCAGTGAGG CTGTATCCCC
  AGAAGTAGAC CAGAATGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60312980	NES15818158	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51878569					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312980	NES15818158	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46387211 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11002	CpG island 11002	1347 bp distal
Rr406001	regulatory region 406001	1845 bp downstream
Rr548730	regulatory region 548730	1736 bp distal
Rr548732	regulatory region 548732	1902 bp distal
Rr548733	regulatory region 548733	1190 bp distal
Rr548734	regulatory region 548734	1148 bp distal
Rr548735	regulatory region 548735	1225 bp proximal
Sufu	SUFU negative regulator of hedgehog signaling	Intron
Tssr156753	transcription start site region 156753	1773 bp downstream
Tssr156754	transcription start site region 156754	1739 bp downstream