rs51879030 SNP Detail

Summary

• ID
  rs51879030
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9468983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTGTTTC CTTCTTAAAG
  AAAACAAATG AAAGGACCTT GGCTTAGTAT ACTAGCCTGT TTGCCTGGAA ACCTGATAGA
  AATAGATGTG AGCTGTGTTG CCAGGCAACA GGGCTTATAG AGAGAATGAC CTATGACTGA
  CTGGCCAGCC TCATAGGAAC TGAGGGAGGC CATGAAGAAA CATAACTGAT ATGATAACCC
  Y
  GAGCTTTCTC AGTGCAGTGA CTTGCCACTG GGCACTTCCC TGGATGAGGC CAGGGAGTTC
  TGGCTGTGGG ATCCTAGTGG CAGGAGGAGT CTGATGCTAC AGTCCTCACC CTTGACCTTT
  GACTTAGCTC TGAAAACGAG TCCTTGGTCT CTGGGACTCT TTCTGCTATT TCCTCTACAT
  TGTCCAGGGG AGCTATCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60369232	NES15871126	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51879030					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60369232	NES15871126	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9468983 () rs orientation: forward

Symbol	Name	Function Class
C030034L19Rik	RIKEN cDNA C030034L19 gene	within coordinates
Gm55345	predicted gene, 55345	1438 bp downstream
Rr82079	regulatory region 82079	within coordinates
Tssr28343	transcription start site region 28343	896 bp downstream
Tssr28344	transcription start site region 28344	831 bp downstream
Tssr28345	transcription start site region 28345	793 bp downstream