rs51879551 SNP Detail

Summary

• ID
  rs51879551
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71149582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTCCACTCT ATCTTTCTGG ATGGTCACTT GCCTACAAAA
  GGGGATAAAA CCTGGGTGTG TGGCTCTCTG AGGCAACAAC TGGTCAAGGC TCGGGCGGGG
  K
  TTTGGGGGGA GGGGGGAGAA CCCTCTGAGG CCTCAATGGC CTGGGCGAAG GTCCTGAGGT
  GCAAAGGAGC TCCAATGGGG TACAGATTGG AGAGGAGTC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145129759	ENSMUSSNP3399064	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51879551					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71149582 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20485	CpG island 20485	1252 bp distal
Cpgi20486	CpG island 20486	within coordinates
Gm64347	predicted gene, 64347	within coordinates
Gm64349	predicted gene, 64349	1561 bp upstream
Rr368548	regulatory region 368548	1203 bp downstream
Rr368549	regulatory region 368549	1364 bp upstream
Rr368550	regulatory region 368550	1727 bp upstream
Rr400910	regulatory region 400910	1352 bp downstream
Rr664888	regulatory region 664888	within coordinates
Rr664889	regulatory region 664889	1071 bp proximal
Rr664890	regulatory region 664890	1572 bp proximal
Rr664891	regulatory region 664891	1726 bp proximal
Rr664892	regulatory region 664892	1871 bp proximal
Tssr77799	transcription start site region 77799	1594 bp upstream
Tssr77800	transcription start site region 77800	1999 bp upstream
Tssr81647	transcription start site region 81647	1385 bp downstream
Tssr81648	transcription start site region 81648	1402 bp downstream