rs51879774 SNP Detail

Summary

• ID
  rs51879774
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172188763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CATAGCTTC CCTCTCCTCC AGAAAGTCTT
  CCCTGACTAC CAGTAGTGTG CCCCCCCGCC CTATACTGTC TCTTCTCTAG CGCTCAGATC
  TTAGCTGCCT TCACGATCTG GTACAACCTC TCACCTTGTT CTGCCACATC AGCCCTGTTG
  R
  TAGcctaacc ctaaccctaa ccctaacctt aaACACACAC TCTGCCTTGA CAGGTGTGTT
  TACAGCAAGG ATAAGTCTGG TCTCAGGCTC ATAGGATCCA TGTCTCTGCT TGCTAAGTCA
  ATCACTTTGA TCAAACGCTA TCCCTTTTCC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148314031	ENSMUSSNP4883464	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320618217	CHEV_2_172172343	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51879774					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172188763 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12819	CpG island 12819	460 bp distal
Fam210b	family with sequence similarity 210, member B	within coordinates
Rr56171	regulatory region 56171	within coordinates
Tssr21944	transcription start site region 21944	1253 bp downstream
Tssr21945	transcription start site region 21945	1217 bp downstream
Tssr21946	transcription start site region 21946	1196 bp downstream
Tssr27939	transcription start site region 27939	1160 bp upstream