rs51880398 SNP Detail

Summary

• ID
  rs51880398
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154937169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAAGGTGAA CATGACTCAG ACAGTGAGCT CTCCCCACTC
  ACACTGCGGT CCCCTCCGAA GCTGAGCAGG TCTGGAACCA CAACACACTT GCCCTTTCGG
  R
  GAGCAGGTTG GGGCACCTCT ACTTTGCCAT CAGAGTTACA GAATGTTCCC CTAGAGCGTC
  TAACCCATGC TCTTCAAATG GCTTTAATGG TGGGAGGGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145774568	ENSMUSSNP5366134	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51880398					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154937169 () rs orientation: forward

Symbol	Name	Function Class
Cpgi880	CpG island 880	1536 bp distal
Gm41980	predicted gene, 41980	1089 bp upstream
Gm51651	predicted gene, 51651	within coordinates
Gm70900	predicted gene, 70900	1831 bp upstream
Rr396410	regulatory region 396410	1564 bp downstream
Rr420926	regulatory region 420926	1842 bp distal
Rr420927	regulatory region 420927	1341 bp distal
Rr420928	regulatory region 420928	256 bp distal
Rr420929	regulatory region 420929	646 bp proximal
Tssr248	transcription start site region 248	1893 bp upstream
Tssr9521	transcription start site region 9521	1713 bp downstream
Tssr9522	transcription start site region 9522	1477 bp downstream
Tssr9523	transcription start site region 9523	878 bp upstream
Tssr14331	transcription start site region 14331	1878 bp upstream
Tssr14332	transcription start site region 14332	1866 bp upstream
Tssr14333	transcription start site region 14333	1848 bp upstream