rs51880516 SNP Detail

Summary

• ID
  rs51880516
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70168545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGATATGA AAAAATATTA ATAATTAGGA TTTGGAAAAA
  TTGAACCTTG GATAGAATAT CTTGGAAATA TAAAATATCT TGGAAAAATA GCCTTGGCCA
  R
  ATTACCACCA GAGGCGTGAC ACCTTTTTAC TTTCTATTCA GTAAATTATG AAATTGTGGA
  AATACACAAA CATATTTGTC TGTTTCTGAT ATAACATCCT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ
ss60634603	NES16285204	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ
rs51880516					SNP	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60634603	NES16285204	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70168545 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20415	CpG island 20415	483 bp proximal
Gm51532	predicted gene, 51532	1257 bp upstream
Gm64048	predicted gene, 64048	663 bp upstream
Rr186712	regulatory region 186712	within coordinates
Rr400882	regulatory region 400882	445 bp upstream
Rr400883	regulatory region 400883	970 bp upstream
Tssr77669	transcription start site region 77669	685 bp upstream
Tssr81531	transcription start site region 81531	520 bp downstream
Tssr81532	transcription start site region 81532	542 bp downstream
Tssr81533	transcription start site region 81533	932 bp downstream
Tssr81534	transcription start site region 81534	955 bp downstream
Zfp869	zinc finger protein 869	within coordinates